Write a reference bundle to a directory — dmsa_reference

The inverse of dmsa_reference_read(): useful for saving a bundle built from a one-file csv, or a generated bundle you have edited.

Usage

dmsa_reference_write(reference, dir)

Arguments

reference: A dmsa_reference.
dir: Directory to create and write into.

Value

dir, invisibly.

Examples

f <- tempfile(fileext = ".csv")
dmsa_reference_template(f)
#> template written to /var/folders/yd/5vhpvlls31x18db51sk7y_zh0000gn/T//RtmpUh53Rl/file76644cd99021.csv
#>   system + gene are required; module, w_g, anchor, role, confidence, source are optional.
#>   w_g: +1 raises system activation, -1 opposes it, 0 off-axis; continuous values in [-1, 1] are allowed.
#>   anchor: TRUE for the genes that DEFINE activation for that system.
ref <- dmsa_reference_csv(f, quiet = TRUE)

d <- tempfile()
dmsa_reference_write(ref, d)
list.files(d)
#> [1] "anchors.csv"  "manifest.dcf" "polarity.csv" "systems.csv" 
nrow(dmsa_reference_read(d)$systems)
#> [1] 8