Save a coordinate table so the lookup never has to be repeated
Source:R/coords.R
dmsa_write_coords.RdSave a coordinate table so the lookup never has to be repeated
Arguments
- coords
Result of
dmsa_probe_coords().- path
csv path.
Examples
## run the lookup once, then keep the csv with the project
co <- data.frame(probe = c("cg00000029", "cg00000108", "cg00000109"),
chr = c("16", "3", "3"),
pos = c(53434200, 37417716, 171916037))
f <- dmsa_write_coords(co, tempfile(fileext = ".csv"))
#> wrote /var/folders/yd/5vhpvlls31x18db51sk7y_zh0000gn/T//RtmpUh53Rl/file76644c684d7c.csv - keep it with the project; the lookup is no longer needed
utils::read.csv(f)
#> probe chr pos
#> 1 cg00000029 16 53434200
#> 2 cg00000108 3 37417716
#> 3 cg00000109 3 171916037